Index

_

__eq__() (scyseq.sequence.Alphabet method) (scyseq.sequence.Sequence method) (scyseq.sequence.Symbol method) __init__() (scyseq.exceptions.AlphabetAccessError method) (scyseq.exceptions.EmptyAlphabetError method) (scyseq.exceptions.InvalidSymbolError method) (scyseq.exceptions.LengthError method) (scyseq.exceptions.SequenceParseError method) (scyseq.exceptions.SymbolAccessError method) (scyseq.exceptions.SymbolDefinitionError method) (scyseq.exceptions.SymbolMismatchError method) (scyseq.sequence.Alphabet method) (scyseq.sequence.Sequence method) (scyseq.sequence.Symbol method)

__weakref__ (scyseq.exceptions.ScyseqError attribute)

A

Alphabet (class in scyseq.sequence) alphabet (scyseq.sequence.Sequence property)

AlphabetAccessError AlphabetError

B

binary_alphabet (in module scyseq.sequence) binary_logistic_sequence() (in module scyseq.generator)

binary_map1d_sequence() (in module scyseq.generator) block_entropy() (in module scyseq.information) boolean_alphabet (in module scyseq.sequence)

C

conditional_matrix() (in module scyseq.stochastic) contains_sublist() (in module scyseq.algorithmic)

count() (in module scyseq.operations) (scyseq.sequence.Sequence method)

E

effective_complexity() (in module scyseq.information)

EmptyAlphabetError entropy_rate() (in module scyseq.information)

F

frequency() (in module scyseq.operations) (scyseq.sequence.Sequence method)

G

generate() (in module scyseq.generator)

get_state_colors() (in module scyseq.viz)

H

H() (in module scyseq.information)

I

influence_matrix() (in module scyseq.stochastic) InvalidSymbolError items() (scyseq.sequence.Alphabet method) iteritems() (scyseq.sequence.Sequence method)

iterivals() (scyseq.sequence.Sequence method) itersvals() (scyseq.sequence.Sequence method) ival (scyseq.sequence.Symbol property) ivals (scyseq.sequence.Alphabet property) (scyseq.sequence.Sequence property)

K

k (scyseq.sequence.Sequence property)

L

lempel_ziv() (in module scyseq.algorithmic) LengthError

lz76() (in module scyseq.algorithmic) lz77() (in module scyseq.algorithmic)

M

markov_sequence() (in module scyseq.generator) metric_entropy() (in module scyseq.information) module scyseq.algorithmic scyseq.discretize scyseq.exceptions scyseq.generator scyseq.information scyseq.io scyseq.operations scyseq.recurrence scyseq.sequence scyseq.stochastic scyseq.viz

multi_information() (in module scyseq.information) mutual_information() (in module scyseq.information)

P

partition() (in module scyseq.discretize) phase_cluster() (in module scyseq.discretize) plot() (in module scyseq.viz)

plot_bar() (in module scyseq.viz) plot_color() (in module scyseq.viz) plot_grid() (in module scyseq.viz) plot_independence() (in module scyseq.viz)

R

R() (in module scyseq.information) read_codix() (in module scyseq.io) recode() (in module scyseq.operations) recurrence() (in module scyseq.recurrence) reduce() (in module scyseq.operations) (scyseq.sequence.Sequence method) rename() (in module scyseq.operations) (scyseq.sequence.Alphabet method) (scyseq.sequence.Sequence method)

renyi_entropy() (in module scyseq.information) reverse() (in module scyseq.operations) (scyseq.sequence.Sequence method) roll() (in module scyseq.operations) (scyseq.sequence.Sequence method)

S

scyseq.algorithmic module scyseq.discretize module scyseq.exceptions module scyseq.generator module scyseq.information module scyseq.io module scyseq.operations module scyseq.recurrence module scyseq.sequence module scyseq.stochastic module

scyseq.viz module ScyseqError Sequence (class in scyseq.sequence) SequenceError SequenceParseError shannon_entropy() (in module scyseq.information) shuffle() (in module scyseq.operations) (scyseq.sequence.Sequence method) subdivision() (in module scyseq.discretize) sval (scyseq.sequence.Symbol property) svals (scyseq.sequence.Alphabet property) (scyseq.sequence.Sequence property) Symbol (class in scyseq.sequence) SymbolAccessError SymbolDefinitionError SymbolError symbolize() (in module scyseq.discretize) SymbolMismatchError

T

T() (in module scyseq.information) topological_entropy() (in module scyseq.information)

transfer_entropy() (in module scyseq.information) transform() (in module scyseq.operations) transition_matrix() (in module scyseq.stochastic)

U

uniform_sequence() (in module scyseq.generator)

W

words() (in module scyseq.operations)